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cognitis nomina
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Genomes
sc|0001699
JSON
Genome sc|0001699
Name
“Thermoanaerobacterium cellulosifermentans”
Database
NCBI Assembly
Accession
GCF_030534315.2
Genomics
Accession
NCBI Assembly:
GCF_030534315.2
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
4.86%
Quality:
75.7
Ribosomal and transfer RNA genes
5 16S rRNAs (up to 100.0%)
5 23S rRNAs (up to 100.0%)
tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
BioSample: SAMN36429468
Other features
G+C Content:
34.0%
Coding Density:
87.67%
Codon Table:
11
N50:
3,019,811 bp
Contigs:
1
Largest Contig:
3,019,811 bp
Assembly Length:
3,019,811 bp
Ambiguous Assembly Fraction:
0.0033%
Submitter comments
The G+C content (%), completeness, contamination, 16S rRNA and 23S rRNA gene fragments were determined using NCBI RefSeq.
Automated checks
Complete
Last modified
8 months ago
Sample Metadata
BioSample entries
BioSample: SAMN36429468
Date
Collection Date:
2017-06-06
Location
Lat Lon:
17.238996 N 73.551293 E
Toponym
Geo Loc Name:
India: Maharashtra
Environment
Isolation Source:
Hot spring sediment
Env Broad Scale:
no data
Env Local Scale:
no data
Env Medium:
no data
Other
Depth:
no data
Package
Ncbi Submission Package:
MIGS.ba.sediment.6.0
Biosamplemodel:
MIGS/MIMS/MIMARKS.sediment
All retrieved samples
SAMN36429468
: MIGS Cultured Bacterial/Archaeal sample from Thermoanaerobacterium sp. CMT5567-10
Metadata retrieved
8 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN36429468
×
Keywords: GSC:MIxS;MIGS:6.0
strain
CMT5567-10
collection_date
2017-06-06
isol_growth_condt
no data
ref_biomaterial
not applicable
organism
Thermoanaerobacterium sp. CMT5567-10
env_broad_scale
no data
env_local_scale
no data
NCBI submission package
MIGS.ba.sediment.6.0
depth
no data
elev
no data
num_replicons
no data
geo_loc_name
India: Maharashtra
env_medium
no data
lat_lon
17.238996 N 73.551293 E
isolation_source
Hot spring sediment
BioSampleModel
MIGS/MIMS/MIMARKS.sediment
ENA-FIRST-PUBLIC
2023-07-13
ENA-LAST-UPDATE
2023-07-14
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