SeqCode Registry
cognitis nomina
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Genomes
sc|0001706
JSON
Genome sc|0001706
Name
“Coneutiohabitans nanjingensis”
Database
NCBI Assembly
Accession
GCA_013359425.1
Genomics
Accession
NCBI Assembly:
GCA_013359425.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
95.54%
Contamination:
2.2%
Quality:
84.54
Ribosomal and transfer RNA genes
1 16S rRNA (up to 37.0%)
0 23S rRNAs
tRNAs for 45 amino acids
Sequencing depth
169.0 ×
Source
BioSample: SAMN14239049
BioSample: SAMN13875377
Other features
G+C Content:
59.33%
Coding Density:
86.98%
Codon Table:
11
N50:
33,546 bp
Contigs:
303
Largest Contig:
101,258 bp
Assembly Length:
7,052,599 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
5 months ago
Sample Metadata
BioSample entries
BioSample: SAMN14239049
BioSample: SAMN13875377
Date
Collection Date:
2018-04-01
Location
Lat Lon:
32.0 N 118.7 E
Toponym
Geo Loc Name:
China:NanJing
Environment
Sample Type:
metagenomic assembly
Isolation Source:
partial denitrification and anammox bioreactor
Other
Not detected
Package
Ncbi Submission Package:
Microbe.1.0
•
Metagenome.environmental.1.0
Biosamplemodel:
Microbe, viral or environmental • Metagenome or environmental
All retrieved samples
SAMN14239049
: Microbe sample from candidate division KSB1 bacterium
SAMN13875377
: Metagenome or environmental sample from activated sludge metagenome
Metadata retrieved
5 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN14239049
×
collection_date
2018-04-01
isolate
MAG_40
NCBI submission package
Microbe.1.0
organism
candidate division KSB1 bacterium
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the activated sludge metagenome BioSample: SAMN13875377
geo_loc_name
China:NanJing
lat_lon
32.0 N 118.7 E
environmental-sample
1
isolation_source
partial denitrification and anammox bioreactor
metagenome-source
activated sludge metagenome
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-03-05
ENA-LAST-UPDATE
2020-06-12
SAMN13875377
×
collection_date
2018-04-01
INSDC secondary accession
SRS6015321
NCBI submission package
Metagenome.environmental.1.0
organism
activated sludge metagenome
geo_loc_name
China:NanJing
lat_lon
32.0 N 118.7 E
isolation_source
partial denitrification and anammox bioreactor
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2020-01-17
ENA-LAST-UPDATE
2020-06-12
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