SeqCode Registry
cognitis nomina
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Genomes
sc|0001733
JSON
Genome sc|0001733
Database
INSDC Nucleotide
Accession
JAPDQM000000000
Genomics
Accession
INSDC Nucleotide:
JAPDQM000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
87.85%
(automated estimate: 84.0%)
Contamination:
2.2%
(automated estimate: 1.9%)
Quality:
76.85
(automated estimate: 74.5)
Ribosomal and transfer RNA genes
0 16S rRNAs
(automated estimate: 0)
0 23S rRNAs
(automated estimate: 0)
tRNAs for 29 amino acids
(automated estimate: 16)
Sequencing depth
17.0 ×
Source
BioSample: SAMN31516266
Other features
G+C Content:
47.62%
(automated estimate: 47.62%)
Coding Density:
86.19%
Codon Table:
11
N50:
30,140 bp
Contigs:
190
Largest Contig:
102,774 bp
Assembly Length:
4,157,021 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
8 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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