SeqCode Registry
cognitis nomina
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Genomes
sc|0000180
JSON
Genome sc|0000180
Name
“Hungatella pullicola”
Database
NCBI Assembly
Accession
GCA_019114305.1
Genomics
Accession
NCBI Assembly:
GCA_019114305.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
94.3%
Contamination:
0.84%
Quality:
90.1
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 18 amino acids
Source
BioSample: SAMN15816620
BioSample: SAMEA5754830
Other features
G+C Content:
44.57%
Coding Density:
89.69%
Codon Table:
11
N50:
43,253 bp
Contigs:
92
Largest Contig:
168,165 bp
Assembly Length:
2,902,137 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN15816620
BioSample: SAMEA5754830
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Sample Type:
metagenomic assembly
Other
Host:
Gallus gallus
Package
Ena Checklist:
ERC000011
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
Additional Accessions
ERR3414581
All retrieved samples
SAMN15816620
: Microbe sample from Candidatus Hungatella pullicola
SAMEA5754830
: Chicken 11 cecal contents: Ranger Classic, Vegetable diet
Metadata retrieved
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15816620
×
organism
Candidatus Hungatella pullicola
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: ERR3414581
environmental sample
1
Source Metagenome Bioproject
PRJEB33338
metagenome source
gut metagenome
isolate
CHK186-17716
NCBI submission package
Microbe.1.0
GTDB_organism_name
Hungatella pullicola
host
Gallus gallus
previous_organism_name
Hungatella sp.
NCBI_LCA_organism_name
Hungatella sp.
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-09-21
ENA-LAST-UPDATE
2021-06-09
SAMEA5754830
×
Metagenome from cecal contents of chicken 11. Female Ranger Classic on Vegetable diet
ENA-CHECKLIST
ERC000011
organism
metagenome
ENA-FIRST-PUBLIC
2019-07-11
ENA-LAST-UPDATE
2019-07-04
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