JSON

Genome sc|0001817

Name

“Sifarchaeum subterraneum”

Database

NCBI Assembly

Accession

GCA_016292335.1

Genomics

Accession
NCBI Assembly:GCA_016292335.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 81.46%
  • Contamination: 1.87%
  • Quality: 72.11
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 0.0%)
  • 2 23S rRNAs (up to 74.0%)
  • tRNAs for 17 amino acids
Sequencing depth
24.0 ×
Source
Other features
  • G+C Content: 36.5%
  • Coding Density: 78.93%
  • Codon Table: 11
  • N50: 7,961 bp
  • Contigs: 300
  • Largest Contig: 38,150 bp
  • Assembly Length: 2,016,049 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Quality metrics are based on CheckM.
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2011-03-25
Location
Lat Lon: 8.68 N 84.03 W
Toponym
Geo Loc Name: Pacific Ocean: off Costa Rica Margin
Environment
Sample Type: metagenome assembly
Isolation Source: marine sediment
Env Broad Scale: sediment microbiome
Env Local Scale: not applicable
Env Medium: marine sediment
Other
Depth: 3.2
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN13740742
All retrieved samples
Metadata retrieved about 2 months ago


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