SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0000182
JSON
Genome sc|0000182
Name
“Acetatifactor stercoripullorum”
Database
NCBI Assembly
Accession
GCA_019114005.1
Genomics
Accession
NCBI Assembly:
GCA_019114005.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
97.49%
Contamination:
1.15%
Quality:
91.74
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 19 amino acids
Source
BioSample: SAMN15816622
BioSample: SAMEA5754839
Other features
G+C Content:
48.46%
Coding Density:
91.28%
Codon Table:
11
N50:
59,234 bp
Contigs:
73
Largest Contig:
220,071 bp
Assembly Length:
3,067,746 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN15816622
BioSample: SAMEA5754839
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Sample Type:
metagenomic assembly
Other
Host:
Gallus gallus
Package
Ena Checklist:
ERC000011
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
Additional Accessions
ERR3414590
All retrieved samples
SAMN15816622
: Microbe sample from Candidatus Acetatifactor stercoripullorum
SAMEA5754839
: Chicken 20 cecal contents: Ross 308, Vegetable diet
Metadata retrieved
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15816622
×
organism
Candidatus Acetatifactor stercoripullorum
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: ERR3414590
environmental sample
1
Source Metagenome Bioproject
PRJEB33338
metagenome source
gut metagenome
isolate
CHK195-6426
NCBI submission package
Microbe.1.0
GTDB_organism_name
Acetatifactor stercoripullorum
host
Gallus gallus
previous_organism_name
Acetatifactor sp.
NCBI_LCA_organism_name
Acetatifactor sp.
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-09-21
ENA-LAST-UPDATE
2021-06-09
SAMEA5754839
×
Metagenome from cecal contents of chicken 20. Male Ross 308 on Vegetable diet
ENA-CHECKLIST
ERC000011
organism
metagenome
ENA-FIRST-PUBLIC
2019-07-11
ENA-LAST-UPDATE
2019-07-04
Search
×
Names
Publications
Authors
Subjects