JSON

Genome sc|0001878

Name

“Sediminicultor secundus”

Database

NCBI Assembly

Accession

GCA_002849045.2

Genomics

Accession
NCBI Assembly:GCA_002849045.2
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 88.14%
  • Contamination: 3.54%
  • Quality: 70.44
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 70.0%)
  • tRNAs for 19 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 34.83%
  • Coding Density: 83.02%
  • Codon Table: 11
  • N50: 5,234 bp
  • Contigs: 698
  • Largest Contig: 32,879 bp
  • Assembly Length: 2,233,122 bp
  • Ambiguous Assembly Fraction: 0.0033%
Automated checks
Complete
Last modified 7 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012-01-15
Location
Not detected
Toponym
Geo Loc Name: Ross Sea
Environment
Sample Type: single cell
Isolation Source: 18 single cells amplified by MDA from marine sediment
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 7 months ago


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