JSON

Genome sc|0001881

Name

“Sediminicultor quintus”

Database

NCBI Assembly

Accession

GCA_001773955.1

Genomics

Accession
NCBI Assembly:GCA_001773955.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 93.59%
  • Contamination: 3.85%
  • Quality: 74.34
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 35.36%
  • Coding Density: 86.14%
  • Codon Table: 11
  • N50: 20,590 bp
  • Contigs: 113
  • Largest Contig: 67,999 bp
  • Assembly Length: 1,954,112 bp
  • Ambiguous Assembly Fraction: 0.4%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2007-07-07
Location
Lat Lon: 39.5369 N 107.7828 W
Toponym
Geo Loc Name: USA: Rifle, CO
Environment
Isolation Source: Rifle background sediment; well D04 at 19ft depth
Other
Not detected
Package
Ncbi Submission Package: Metagenome.environmental.1.0
Biosamplemodel: Metagenome or environmental
All retrieved samples
Metadata retrieved about 2 months ago


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