JSON

Genome sc|0001882

Name

“Sediminicultor sextus”

Database

NCBI Assembly

Accession

GCA_014894735.1

Genomics

Accession
NCBI Assembly:GCA_014894735.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 89.68%
  • Contamination: 0.0%
  • Quality: 89.68
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 31.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 34.87%
  • Coding Density: 87.31%
  • Codon Table: 11
  • N50: 10,805 bp
  • Contigs: 174
  • Largest Contig: 53,058 bp
  • Assembly Length: 1,432,456 bp
  • Ambiguous Assembly Fraction: 0.68%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2015-07
Location
Lat Lon: 69.20 N 154.59 E
Toponym
Geo Loc Name: Russia: Siberia, Kolyma Indigirka Lowland Region
Environment
Sample Type: metagenomic assembly
Isolation Source: ancient permafrost soil
Env Broad Scale: permafrost
Env Local Scale: permafrost, ancient, soil northeast siberian, kolyma
Env Medium: permafrost
Other
Depth: 7.2
Package
Ncbi Submission Package: MIMAG.soil.5.0
Biosamplemodel: MIMAG.soil
Additional Accessions
SAMN14448308
All retrieved samples
Metadata retrieved about 2 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license