JSON

Genome sc|0001883

Database

NCBI Assembly

Accession

GCA_002782675.1

Genomics

Accession
NCBI Assembly:GCA_002782675.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 89.15% (automated estimate: 91.5%)
  • Contamination: 0.0% (automated estimate: 0.9%)
  • Quality: 89.15 (automated estimate: 87.0)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 33.65% (automated estimate: 33.62%)
  • Coding Density: 86.6%
  • Codon Table: 11
  • N50: 12,703 bp
  • Contigs: 173
  • Largest Contig: 63,381 bp
  • Assembly Length: 1,671,248 bp
  • Ambiguous Assembly Fraction: 0.088%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2014-04-08
Location
Lat Lon: 38.56 N 110.8 W
Toponym
Geo Loc Name: USA: Crystal Geyser near Green River, Utah
Environment
Env Material: groundwater
Sample Type: metagenomic assembly
Env Biome: subsurface
Isolation Source: groundwater
Other
Depth: 2 m
Package
Ncbi Submission Package: MIGS.ba.water.5.0
Biosamplemodel: MIGS.ba
All retrieved samples
Metadata retrieved about 2 months ago


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