Genome sc|0001883

Genomics

Accession

NCBI Assembly:GCA_002782675.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 89.15% (automated estimate: 91.5%)
• Contamination: 0.0% (automated estimate: 0.9%)
• Quality: 89.15 (automated estimate: 87.0)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

100.0 ×

Source

• BioSample: SAMN06659908

Other features

• G+C Content: 33.65% (automated estimate: 33.62%)
• Coding Density: 86.6%
• Codon Table: 11
• N50: 12,703 bp
• Contigs: 173
• Largest Contig: 63,381 bp
• Assembly Length: 1,671,248 bp
• Ambiguous Assembly Fraction: 0.088%

Automated checks

Complete

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Last modified 7 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN06659908

Date

Collection Date: 2014-04-08

Location

Lat Lon: 38.56 N 110.8 W

Toponym

Geo Loc Name: USA: Crystal Geyser near Green River, Utah

Environment

Env Material: groundwater

Sample Type: metagenomic assembly

Env Biome: subsurface

Isolation Source: groundwater

Other

Depth: 2 m

Package

Ncbi Submission Package: MIGS.ba.water.5.0

Biosamplemodel: MIGS.ba

All retrieved samples

• SAMN06659908: MIGS Cultured Bacterial/Archaeal sample from Candidatus Atribacteria bacterium CG_4_8_14_3_um_filter_34_18

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Metadata retrieved 7 months ago