JSON

Genome sc|0001885

Name

“Stramentimicrobium fermentans”

Database

NCBI Assembly

Accession

GCA_012520575.1

Genomics

Accession
NCBI Assembly:GCA_012520575.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 100.0%
  • Contamination: 0.0%
  • Quality: 100.0
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
100.0 ×
Source
Other features
  • G+C Content: 37.74%
  • Coding Density: 85.26%
  • Codon Table: 11
  • N50: 79,268 bp
  • Contigs: 50
  • Largest Contig: 132,402 bp
  • Assembly Length: 1,583,929 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: not applicable
Location
Lat Lon: not applicable
Toponym
Geo Loc Name: not applicable
Environment
Sample Type: metagenomic assembly
Isolation Source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks
Env Broad Scale: not applicable
Env Local Scale: not applicable
Env Medium: not applicable
Other
Not detected
Package
Ncbi Submission Package: MIMAG.5.0
Biosamplemodel: MIMAG
Additional Accessions
This BioSample is a metagenomic assembly obtained from the anaerobic digester metagenome reads deposited in SRR3184552, SRR3184553, SRR3184554, SRR3184648, SRR3184649, SRR3184675, SRR3184676, SRR3184677
All retrieved samples
Metadata retrieved about 2 months ago


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