SeqCode Registry
cognitis nomina
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Genomes
sc|0001887
JSON
Genome sc|0001887
Name
“Nanogingivalis gingivitcus”
Database
NCBI Assembly
Accession
GCA_004151455.1
Genomics
Accession
NCBI Assembly:
GCA_004151455.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
88.7%
Contamination:
0.0%
Quality:
88.7
Ribosomal and transfer RNA genes
1 16S rRNA (up to 100.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 20 amino acids
Source
BioSample: PRJNA384792
Other features
G+C Content:
32.34%
Coding Density:
90.04%
Codon Table:
11
N50:
70,435 bp
Contigs:
17
Largest Contig:
136,145 bp
Assembly Length:
625,762 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
7 months ago
Sample Metadata
BioSample entries
BioSample: PRJNA384792
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Analyte Type:
DNA
Other
Not detected
Package
Ncbi Package:
Generic.1.0
All retrieved samples
PRJNA384792
: Non-tumor DNA sample from BLOOD of a human female participant in the dbGaP study "CGEMS Breast Cancer GWAS"
Metadata retrieved
7 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
PRJNA384792
×
gap_accession
phs000147
submitter_handle
CABIG
biospecimen_repository
CABIG
study_name
CGEMS Breast Cancer GWAS
study_design
Case-Control
biospecimen_repository_sample_id
CS-B01-01919
submitted_sample_id
CS-B01-01919
submitted_subject_id
CG-B01-01119
gap_sample_id
35890
gap_subject_id
92529
sex
female
study_disease
Breast Neoplasms
tissue
BLOOD
histological_type
BLOOD
analyte_type
DNA
is_tumor
No
subject_is_affected
Yes
molecular_data_type
SNP Genotypes (imputed)
gap_consent_code
1
gap_consent_short_name
GRU
ncbi_package
Generic.1.0
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