SeqCode Registry
cognitis nomina
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Genomes
sc|0001889
JSON
Genome sc|0001889
Database
NCBI Assembly
Accession
JAPYMX000000000
Genomics
Accession
NCBI Assembly:
JAPYMX000000000
Type
Metagenome-Assembled Genome (MAG)
Source
BioSample: SAMN30287265
Automated checks
Failed: Cannot find ncbi:assembly:JAPYMX000000000
Last modified
7 months ago
Sample Metadata
BioSample entries
BioSample: SAMN30287265
Date
Collection Date:
2014-06
Location
Lat Lon:
18.816 S 147.633 E
Toponym
Geo Loc Name:
Australia: Davies Reef, Great Barrier Reef
Environment
Sample Type:
metagenomic assembly
Isolation Source:
sponge tissue, high temperature, high CO2
Env Broad Scale:
coral reef [
ENVO:00000150
]
Env Local Scale:
coral reef [
ENVO:00000150
]
Env Medium:
sponge
Other
Host:
Stylissa flabelliformis
Package
Ncbi Package:
MIMAG.host-associated.6.0
Additional Accessions
SAMN13227185, SAMN13227186, SAMN13227189
Append as BioSamples
All retrieved samples
SAMN30287265
: MIMAG Metagenome-assembled Genome sample from Gammaproteobacteria bacterium
Metadata retrieved
7 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN30287265
×
Keywords: GSC:MIxS;MIMAG:6.0
collection_date
2014-06
geo_loc_name
Australia: Davies Reef, Great Barrier Reef
host
Stylissa flabelliformis
lat_lon
18.816 S 147.633 E
isolation_source
sponge tissue, high temperature, high CO2
isolate
r_sthh7
env_broad_scale
coral reef [ENVO:00000150]
env_local_scale
coral reef [ENVO:00000150]
env_medium
sponge
metagenomic
1
environmental-sample
1
sample_type
metagenomic assembly
metagenome_source
sponge metagenome
experimental_conditions
high temperature, high CO2
number_of_host_metagenomes
3
derived_from
SAMN13227185, SAMN13227186, SAMN13227189
ncbi_package
MIMAG.host-associated.6.0
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