JSON

Genome sc|0001893

Name

“Geothermadaptatus lauensis”

Database

NCBI Assembly

Accession

GCA_015487885.1

Genomics

Accession
NCBI Assembly:GCA_015487885.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.54%
  • Contamination: 1.1%
  • Quality: 90.04
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Sequencing depth
144.5 ×
Source
Other features
  • G+C Content: 54.32%
  • Coding Density: 83.49%
  • Codon Table: 11
  • N50: 25,711 bp
  • Contigs: 299
  • Largest Contig: 134,227 bp
  • Assembly Length: 4,891,862 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2018-03
Location
Lat Lon: 34.85791311 S 179.0519346 E
Toponym
Geo Loc Name: Pacific Ocean
Environment
Sample Type: metagenomic assembly
Isolation Source: deep-sea hydrothermal deposit
Env Broad Scale: marine hydrothermal vent biome [ENVO:01000030]
Env Local Scale: marine hydrothermal vent [ENVO:01000122]
Env Medium: deep-sea hydrothermal deposit
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
Additional Accessions
SAMN12239307
All retrieved samples
Metadata retrieved about 1 month ago


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