JSON

Genome sc|0001895

Name

“Oleimicrobium calidum”

Database

NCBI Assembly

Accession

GCA_034506335.1

Genomics

Accession
NCBI Assembly: GCA_034506335.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.64%
  • Contamination: 1.64%
  • Quality: 88.44
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
66.0 ×
Source
Other features
  • G+C Content: 59.83%
  • Coding Density: 91.01%
  • Codon Table: 11
  • N50: 50,834 bp
  • Contigs: 90
  • Largest Contig: 284,019 bp
  • Assembly Length: 3,702,765 bp
  • Ambiguous Assembly Fraction: 0.035%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2017-05
Location
Lat Lon: 25.44111 N 98.46000 E
Toponym
Geo Loc Name: China: Tengchong, Yunnan, JinZe Pool 2
Environment
Sample Type: metagenomic assembly
Isolation Source: hot spring sediment
Env Broad Scale: Hydrothermal system
Env Local Scale: Hot spring
Env Medium: Hot spring sediment
Other
Not detected
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN31516059
All retrieved samples
Metadata retrieved about 1 month ago


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