JSON

Genome sc|0001896

Database

NCBI Assembly

Accession

GCA_034506455.1

Genomics

Accession
NCBI Assembly:GCA_034506455.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 89.0% (automated estimate: 93.4%)
  • Contamination: 0.0% (automated estimate: 3.8%)
  • Quality: 89.0 (automated estimate: 74.4)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
122.0 ×
Source
Other features
  • G+C Content: 53.47%
  • Coding Density: 92.64%
  • Codon Table: 11
  • N50: 20,382 bp
  • Contigs: 238
  • Largest Contig: 70,585 bp
  • Assembly Length: 3,181,608 bp
  • Ambiguous Assembly Fraction: 0.45%
Automated checks
Complete
Last modified 7 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2021-01
Location
Not detected
Toponym
Geo Loc Name: China: Tengchong, Yunnan, DPZ site 2
Environment
Sample Type: metagenomic assembly
Isolation Source: hot spring sediment
Env Broad Scale: Hydrothermal system
Env Local Scale: Hot spring
Env Medium: Hot spring sediment
Other
Not detected
Package
Ncbi Submission Package: MIMAG.sediment.6.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN31516057 Append as BioSamples
All retrieved samples
Metadata retrieved 7 months ago


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