JSON

Genome sc|0000190

Name

“Phocaeicola excrementigallinarum”

Database

NCBI Assembly

Accession

GCA_019120125.1

Genomics

Accession
NCBI Assembly:GCA_019120125.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.33%
  • Contamination: 2.33%
  • Quality: 85.68
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Source
Other features
  • G+C Content: 50.43%
  • Coding Density: 90.21%
  • Codon Table: 11
  • N50: 46,615 bp
  • Contigs: 88
  • Largest Contig: 127,034 bp
  • Assembly Length: 2,752,071 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 11 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2012-11-29
Location
Lat Lon: 2.999988 N 101.7230666 E
Toponym
Geo Loc Name: Malaysia: Institute of Bioscience, Selangor
Environment
Sample Type: metagenomic assembly
Isolation Source: Caecal contents of prebiotic hens
Other
Host: Gallus gallus • Hen
Package
Ncbi Submission Package: Microbe.1.0 • Metagenome.environmental.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
Additional Accessions
SRR2134645
All retrieved samples
Metadata retrieved 11 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license