SeqCode Registry
cognitis nomina
About
Search
•
Login
Register
Genomes
sc|0000191
JSON
Genome sc|0000191
Name
“Blautia merdavium”
Database
NCBI Assembly
Accession
GCA_019119975.1
Genomics
Accession
NCBI Assembly:
GCA_019119975.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
94.55%
Contamination:
3.03%
Quality:
79.4
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 16 amino acids
Source
BioSample: SAMN15816633
BioSample: SAMN08009754
Other features
G+C Content:
48.55%
Coding Density:
89.64%
Codon Table:
11
N50:
21,106 bp
Contigs:
235
Largest Contig:
78,701 bp
Assembly Length:
3,348,457 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN15816633
BioSample: SAMN08009754
Date
Collection Date:
2016-10-29
Location
Not detected
Toponym
Geo Loc Name:
China:Beijing
Environment
Sample Type:
metagenomic assembly
Isolation Source:
cecum
Other
Host:
Gallus gallus
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental • Metagenome or environmental
Additional Accessions
SRR6323107
All retrieved samples
SAMN15816633
: Microbe sample from Candidatus Blautia merdavium
SAMN08009754
: Metagenome or environmental sample from chicken gut metagenome
Metadata retrieved
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15816633
×
organism
Candidatus Blautia merdavium
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR6323107
environmental sample
1
Source Metagenome Bioproject
PRJNA417359
metagenome source
gut metagenome
isolate
ChiBcec2-3848
NCBI submission package
Microbe.1.0
GTDB_organism_name
Blautia merdavium
host
Gallus gallus
previous_organism_name
Blautia sp.
NCBI_LCA_organism_name
Blautia sp.
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-09-21
ENA-LAST-UPDATE
2021-06-09
SAMN08009754
×
feed_addictive_/growth_promoter
50 mg/kg Citifac® (Chlortetracycline 20% w/w premix)
sample replicate
pooled digesta from five chickens
INSDC secondary accession
SRS2714762
organism
chicken gut metagenome
collection date
2016-10-29
isolation source
cecum
geo loc name
China:Beijing
host
Gallus gallus
host age
14-day
host gender
male
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2017-12-03
Search
×
Names
Publications
Authors
Subjects