JSON

Genome sc|0001914

Name

“Hydrogenedens terephthalicus”

Database

NCBI Assembly

Accession

GCA_000493945.1

Genomics

Accession
NCBI Assembly:GCA_000493945.1
Type
Single-Cell Amplified Genome (SAG)
Estimated Quality Metrics
  • Completeness: 88.32%
  • Contamination: 2.25%
  • Quality: 77.07
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 19 amino acids
Sequencing depth
30.0 ×
Source
Other features
  • G+C Content: 36.9%
  • Coding Density: 91.55%
  • Codon Table: 11
  • N50: 48,073 bp
  • Contigs: 106
  • Largest Contig: 166,070 bp
  • Assembly Length: 2,874,403 bp
  • Ambiguous Assembly Fraction: 0.0037%
Submitter comments
IMG ID  2518285572; NCBI strain = JGI OTU-1 
Strain Heterogeneity: 100.0 
Automated checks
Complete
Last modified 7 months ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Not detected
Other
Not detected
Package
Ncbi Submission Package: Generic.1.0
Biosamplemodel: Generic
All retrieved samples
Metadata retrieved 7 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license