Genome sc|0001915

Genomics

Accession

NCBI Assembly:GCF_024518615.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.1% (automated estimate: 99.1%)
• Contamination: 1.6% (automated estimate: 0.9%)
• Quality: 91.1 (automated estimate: 94.6)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 100.0%) (automated estimate: 1)
• 1 23S rRNA (up to 100.0%) (automated estimate: 1)
• tRNAs for 20 amino acids (automated estimate: 20)

Sequencing depth

117.604 ×

Source

• BioSample: SAMN29999250

Other features

• G+C Content: 62.5% (automated estimate: 62.59%)
• Coding Density: 87.89%
• Codon Table: 11
• N50: 365,784 bp
• Contigs: 49
• Largest Contig: 1,004,657 bp
• Assembly Length: 6,885,861 bp
• Ambiguous Assembly Fraction: 0.0015%

Submitter comments

All the genome statistics we calculated by quast and BBTools except for the completeness, contamination, tRNA search and rRNA search.
Contamination and completeness was calculated using CheckM, rRNA search was done by Barrnap and finally the tRNA were calculated using tRNAscan-SE

Automated checks

Complete

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Last modified 7 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN29999250

Date

Not detected

Location

Not detected

Toponym

Geo Loc Name: USA

Environment

Isolation Source: nodules

Other

Host: Cicer arietinum

Package

Ncbi Submission Package: MIGS.ba.5.0

Biosamplemodel: MIGS.ba

All retrieved samples

• SAMN29999250: MIGS Cultured Bacterial/Archaeal sample from Mesorhizobium sp. SEMIA396

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Metadata retrieved 7 months ago