Genome sc|0001918

Genomics

Accession

NCBI Assembly:GCF_024518695.1

Type

Isolate Genome

Estimated Quality Metrics

• Completeness: 99.51%
• Contamination: 0.82%
• Quality: 95.41

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 100.0%)
• 2 23S rRNAs (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

133.151 ×

Source

• BioSample: SAMN30011704

Other features

• G+C Content: 62.61%
• Coding Density: 87.66%
• Codon Table: 11
• N50: 544,870 bp
• Contigs: 33
• Largest Contig: 695,698 bp
• Assembly Length: 6,605,807 bp
• Ambiguous Assembly Fraction: 0.0%

Submitter comments

All the genomic statistics were calculated using Quast and BBtools except contaminations, completeness, tRNA search and rRNA searches.
The completeness and contamination was determined using CheckM, rRNA search was done by barrnap and lastly the tRNA search was done by tRNAScan-SE

Automated checks

Complete

Sample Metadata

Date

Not detected

Location

Not detected

Toponym

Geo Loc Name: Russia

Environment

Isolation Source: nodules

Other

Host: Cicer arietinum

Package

Ncbi Submission Package: MIGS.ba.plant-associated.5.0

Biosamplemodel: MIGS/MIMS/MIMARKS.plant-associated

All retrieved samples

• SAMN30011704: MIGS Cultured Bacterial/Archaeal sample from Mesorhizobium sp. LMG17149

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Metadata retrieved 21 days ago