SeqCode Registry
cognitis nomina
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Genomes
sc|0001932
JSON
Genome sc|0001932
Name
“Kluyvera huaxiensis”
Database
NCBI Assembly
Accession
GCA_040149365.1
Genomics
Accession
NCBI Assembly:
GCA_040149365.1
Type
Isolate Genome
Estimated Quality Metrics
Completeness:
100.0%
Contamination:
1.9%
Quality:
90.5
Ribosomal and transfer RNA genes
2 16S rRNAs (up to 62.0%)
2 23S rRNAs (up to 52.0%)
tRNAs for 21 amino acids
Sequencing depth
347.0 ×
Source
BioSample: SAMN41705179
Other features
G+C Content:
53.49%
Coding Density:
88.03%
Codon Table:
11
N50:
183,280 bp
Contigs:
80
Largest Contig:
459,565 bp
Assembly Length:
5,003,793 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
6 months ago
Sample Metadata
BioSample entries
BioSample: SAMN41705179
Date
Collection Date:
2024-04-24
Location
Not detected
Toponym
Geo Loc Name:
China: Chengdu, Sichuan
Environment
Sample Type:
pure culture
Isolation Source:
sputum
Other
Host:
Homo sapiens
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental
All retrieved samples
SAMN41705179
: Microbe sample from Kluyvera sp. 142053
Metadata retrieved
6 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN41705179
×
strain
142053
collection_date
2024-04-24
NCBI submission package
Microbe.1.0
organism
Kluyvera sp. 142053
host
Homo sapiens
geo_loc_name
China: Chengdu, Sichuan
sample_type
pure culture
isolation_source
sputum
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2024-06-06
ENA-LAST-UPDATE
2024-06-07
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