SeqCode Registry
cognitis nomina
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Genomes
sc|0001959
JSON
Genome sc|0001959
Database
INSDC Nucleotide
Accession
JBDRWI000000000
Genomics
Accession
INSDC Nucleotide:
JBDRWI000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
91.14%
(automated estimate: 91.5%)
Contamination:
0.0%
(automated estimate: 0.9%)
Quality:
91.14
(automated estimate: 87.0)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 63.0%)
2 23S rRNAs (up to 100.0%)
tRNAs for 21 amino acids
Sequencing depth
24.842 ×
Source
BioSample: SAMN40924701
Other features
G+C Content:
40.85%
(automated estimate: 40.85%)
Coding Density:
91.92%
Codon Table:
11
N50:
29,317 bp
Contigs:
110
Largest Contig:
74,920 bp
Assembly Length:
2,295,836 bp
Ambiguous Assembly Fraction:
0.0022%
Automated checks
Complete
Last modified
6 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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