SeqCode Registry
cognitis nomina
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Genomes
sc|0001962
JSON
Genome sc|0001962
Database
INSDC Nucleotide
Accession
JBDRVZ000000000
Genomics
Accession
INSDC Nucleotide:
JBDRVZ000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
82.35%
(automated estimate: 87.7%)
Contamination:
2.2%
(automated estimate: 3.8%)
Quality:
71.35
(automated estimate: 68.7)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 47.0%)
1 23S rRNA (up to 34.0%)
tRNAs for 20 amino acids
Sequencing depth
39.902 ×
Source
BioSample: SAMN40924710
Other features
G+C Content:
37.37%
(automated estimate: 37.36%)
Coding Density:
92.46%
Codon Table:
11
N50:
31,616 bp
Contigs:
102
Largest Contig:
107,140 bp
Assembly Length:
2,440,338 bp
Ambiguous Assembly Fraction:
0.021%
Automated checks
Complete
Last modified
6 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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