SeqCode Registry
cognitis nomina
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Genomes
sc|0001979
JSON
Genome sc|0001979
Database
INSDC Nucleotide
Accession
JBDRYD000000000
Genomics
Accession
INSDC Nucleotide:
JBDRYD000000000
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
94.76%
(automated estimate: 91.5%)
Contamination:
0.0%
(automated estimate: 1.9%)
Quality:
94.76
(automated estimate: 82.0)
Ribosomal and transfer RNA genes
1 16S rRNA (up to 32.0%)
1 23S rRNA (up to 100.0%)
tRNAs for 19 amino acids
Sequencing depth
15.677 ×
Source
BioSample: SAMN40924654
Other features
G+C Content:
38.71%
(automated estimate: 38.71%)
Coding Density:
94.1%
Codon Table:
11
N50:
65,610 bp
Contigs:
54
Largest Contig:
198,294 bp
Assembly Length:
1,669,977 bp
Ambiguous Assembly Fraction:
0.0006%
Automated checks
Complete
Last modified
6 months ago
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All information contributed to the SeqCode Registry is released under the terms of the
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license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
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