JSON

Genome sc|0000199

Name

“Ligilactobacillus avistercoris”

Database

NCBI Assembly

Accession

GCA_019119415.1

Genomics

Accession
NCBI Assembly:GCA_019119415.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 97.02%
  • Contamination: 1.05%
  • Quality: 91.77
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 11 amino acids
Source
Other features
  • G+C Content: 50.78%
  • Coding Density: 90.4%
  • Codon Table: 11
  • N50: 118,281 bp
  • Contigs: 20
  • Largest Contig: 178,411 bp
  • Assembly Length: 1,312,440 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2016-11-26
Location
Not detected
Toponym
Geo Loc Name: China:Beijing
Environment
Sample Type: metagenomic assembly
Isolation Source: ileum
Other
Host: Gallus gallus
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental • Metagenome or environmental
Additional Accessions
SRR6323195
All retrieved samples
Metadata retrieved 9 months ago


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