SeqCode Registry
cognitis nomina
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Genomes
sc|0002008
JSON
Genome sc|0002008
Database
NCBI Assembly
Accession
JAFGON01
Genomics
Accession
NCBI Assembly:
JAFGON01
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
90.29%
Contamination:
0.0%
Quality:
90.29
Sequencing depth
12.8 ×
Source
BioSample: SAMN17242119
Other features
G+C Content:
42.35%
Automated checks
Failed: Cannot find ncbi:assembly:JAFGON01
Last modified
6 months ago
Sample Metadata
BioSample entries
BioSample: SAMN17242119
Date
Collection Date:
2017-09
Location
Lat Lon:
34.99562 N 98.68895 W
Toponym
Geo Loc Name:
USA: Anadarko, OK, Zodletone Spring
Environment
Sample Type:
metagenomic assembly
Isolation Source:
freshwater sediment
Env Broad Scale:
Freshwater sediment biome
Env Local Scale:
sediment
Env Medium:
sediment
Other
Depth:
1m
Package
Ncbi Package:
MIMAG.sediment.6.0
Additional Accessions
SAMN17269717
Append as BioSamples
All retrieved samples
SAMN17242119
: MIMAG Metagenome-assembled Genome sample from candidate division WOR-3 bacterium
Metadata retrieved
6 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN17242119
×
Keywords: GSC:MIxS;MIMAG:6.0
isolate
Zod_Metabat.631
collection_date
2017-09
depth
1m
elev
1m
env_broad_scale
Freshwater sediment biome
env_local_scale
sediment
env_medium
sediment
geo_loc_name
USA: Anadarko, OK, Zodletone Spring
isolation_source
freshwater sediment
lat_lon
34.99562 N 98.68895 W
metagenomic
1
environmental-sample
1
sample_type
metagenomic assembly
metagenome_source
freshwater sediment metagenome
derived_from
This BioSample is a metagenomic assembly obtained from the freshwater metagenome BioSample: SAMN17269717
ncbi_package
MIMAG.sediment.6.0
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