SeqCode Registry
cognitis nomina
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Genomes
sc|0002013
JSON
Genome sc|0002013
Database
NCBI Assembly
Accession
PCRC01
Genomics
Accession
NCBI Assembly:
PCRC01
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
95.6%
Contamination:
2.2%
Quality:
84.6
Sequencing depth
10.0 ×
Source
BioSample: SAMN06659699
Other features
G+C Content:
40.03%
Automated checks
Failed: Cannot find ncbi:assembly:PCRC01
Last modified
6 months ago
Sample Metadata
BioSample entries
BioSample: SAMN06659699
Date
Collection Date:
2014-08-20
Location
Lat Lon:
38.56 N 110.8 W
Toponym
Geo Loc Name:
USA: Crystal Geyser near Green River, Utah
Environment
Env Material:
groundwater
Sample Type:
metagenomic assembly
Env Biome:
subsurface
Isolation Source:
groundwater
Other
Depth:
2 m
Package
Ncbi Submission Package:
MIGS.ba.water.5.0
Biosamplemodel:
MIGS.ba
All retrieved samples
SAMN06659699
: MIGS Cultured Bacterial/Archaeal sample from bacterium (Candidatus Stahlbacteria) CG23_combo_of_CG06-09_8_20_14_all_40_9
Metadata retrieved
6 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN06659699
×
Keywords: GSC:MIxS;MIGS:5.0
strain
missing
collection_date
2014-08-20
isol_growth_condt
missing
note
This BioSample is a metagenomic assembly obtained from the groundwater metagenome BioSample: SAMN07960328
ref_biomaterial
missing
env_feature
aquifer
organism
bacterium (Candidatus Stahlbacteria) CG23_combo_of_CG06-09_8_20_14_all_40_9
metagenomic
TRUE
sample_type
metagenomic assembly
environmental-sample
TRUE
metagenome-source
groundwater metagenome
isolate
CG23_combo_of_CG06-09_8_20_14_all_40_9
NCBI submission package
MIGS.ba.water.5.0
depth
2 m
env_material
groundwater
num_replicons
missing
geo_loc_name
USA: Crystal Geyser near Green River, Utah
env_biome
subsurface
lat_lon
38.56 N 110.8 W
isolation_source
groundwater
BioSampleModel
MIGS.ba
ENA-FIRST-PUBLIC
2017-11-15
ENA-LAST-UPDATE
2021-02-28
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