SeqCode Registry
cognitis nomina
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Genomes
sc|0002014
JSON
Genome sc|0002014
Database
NCBI Assembly
Accession
JACQXS01
Genomics
Accession
NCBI Assembly:
JACQXS01
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
86.92%
Contamination:
1.1%
Quality:
81.42
Sequencing depth
37.7 ×
Source
BioSample: SAMN15436168
Automated checks
Failed: Cannot find ncbi:assembly:JACQXS01
Sample Metadata
Date
Collection Date:
2018-09-08
Location
Lat Lon:
38.69129 N 122.54441 W
Toponym
Geo Loc Name:
USA: California, Middletown
Environment
Sample Type:
metagenomic assembly
Isolation Source:
groundwater
Env Broad Scale:
groundwater planktonic microbiome
Env Local Scale:
not applicable
Env Medium:
not applicable
Other
Depth:
<100 m
Package
Ncbi Submission Package:
MIMAG.water.5.0
Biosamplemodel:
MIMAG.water
Additional Accessions
SAMN15459609
Append as BioSamples
All retrieved samples
SAMN15436168
: SR1-18-Bp1_QB3_181220_Stahlbacteria_38_3
Metadata retrieved
10 days ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15436168
×
Keywords: GSC:MIxS;MIMAG:5.0
coverage
3
collection_date
2018-09-08
organism
Candidatus Stahlbacteria bacterium
env_broad_scale
groundwater planktonic microbiome
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the groundwater metagenome BioSample: SAMN15459609
orgmod-note
SR1-18-Bp1_QB3_181220_Stahlbacteria_38_3
environmental-sample
1
env_local_scale
not applicable
metagenome-source
groundwater metagenome
isolate
NC_groundwater_1521_Pr4_B-0.1um_38_3
filtration (bulk or serial size)
bulk
site
Pr4
NCBI submission package
MIMAG.water.5.0
depth
<100 m
filter size
0.1 um
geo_loc_name
USA: California, Middletown
GC
38
env_medium
not applicable
lat_lon
38.69129 N 122.54441 W
isolation_source
groundwater
sample-type
metagenomic assembly
BioSampleModel
MIMAG.water
ENA-FIRST-PUBLIC
2020-12-22
ENA-LAST-UPDATE
2020-12-22
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