SeqCode Registry
cognitis nomina
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Genomes
sc|0000207
JSON
Genome sc|0000207
Name
“Fournierella merdavium”
Database
NCBI Assembly
Accession
GCA_019118765.1
Genomics
Accession
NCBI Assembly:
GCA_019118765.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
94.12%
Contamination:
0.34%
Quality:
92.42
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 20 amino acids
Source
BioSample: SAMN15816653
BioSample: SAMN08009756
Other features
G+C Content:
64.13%
Coding Density:
89.31%
Codon Table:
11
N50:
44,150 bp
Contigs:
92
Largest Contig:
173,653 bp
Assembly Length:
2,626,896 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN15816653
BioSample: SAMN08009756
Date
Collection Date:
2016-11-26
Location
Not detected
Toponym
Geo Loc Name:
China:Beijing
Environment
Sample Type:
metagenomic assembly
Isolation Source:
cecum
Other
Host:
Gallus gallus
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental • Metagenome or environmental
Additional Accessions
SRR6323105
All retrieved samples
SAMN15816653
: Microbe sample from Candidatus Fournierella merdavium
SAMN08009756
: Metagenome or environmental sample from chicken gut metagenome
Metadata retrieved
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15816653
×
organism
Candidatus Fournierella merdavium
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR6323105
environmental sample
1
Source Metagenome Bioproject
PRJNA417359
metagenome source
gut metagenome
isolate
ChiBcec4-1730
NCBI submission package
Microbe.1.0
GTDB_organism_name
Fournierella merdavium
host
Gallus gallus
previous_organism_name
Fournierella sp.
NCBI_LCA_organism_name
Fournierella sp.
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-09-21
ENA-LAST-UPDATE
2021-06-09
SAMN08009756
×
feed_addictive_/growth_promoter
50 mg/kg Citifac® (Chlortetracycline 20% w/w premix)
sample replicate
pooled digesta from five chickens
INSDC secondary accession
SRS2714764
organism
chicken gut metagenome
collection date
2016-11-26
isolation source
cecum
geo loc name
China:Beijing
host
Gallus gallus
host age
42-day
host gender
male
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2017-12-03
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