SeqCode Registry
cognitis nomina
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Genomes
sc|0000213
JSON
Genome sc|0000213
Name
“Bariatricus faecipullorum”
Database
NCBI Assembly
Accession
GCA_019118525.1
Genomics
Accession
NCBI Assembly:
GCA_019118525.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
94.03%
Contamination:
0.88%
Quality:
89.63
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 18 amino acids
Source
BioSample: SAMN15816662
BioSample: SAMN06368937
Other features
G+C Content:
51.35%
Coding Density:
91.07%
Codon Table:
11
N50:
67,718 bp
Contigs:
75
Largest Contig:
168,605 bp
Assembly Length:
2,554,324 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN15816662
BioSample: SAMN06368937
Date
Collection Date:
2015-07-13
Location
Lat Lon:
38.98 N 76.94 W
Toponym
Geo Loc Name:
USA
Environment
Sample Type:
metagenomic assembly
Isolation Source:
groupA replicate 1
Other
Host:
Gallus gallus • Chicken
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental • Metagenome or environmental
Additional Accessions
SRR5280289
All retrieved samples
SAMN15816662
: Microbe sample from Candidatus Bariatricus faecipullorum
SAMN06368937
: Metagenome or environmental sample from chicken gut metagenome
Metadata retrieved
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15816662
×
organism
Candidatus Bariatricus faecipullorum
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR5280289
environmental sample
1
Source Metagenome Bioproject
PRJNA375762
metagenome source
gut metagenome
isolate
9095
NCBI submission package
Microbe.1.0
GTDB_organism_name
Bariatricus faecipullorum
host
Gallus gallus
previous_organism_name
Bariatricus sp.
NCBI_LCA_organism_name
Bariatricus sp.
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-09-21
ENA-LAST-UPDATE
2021-06-09
SAMN06368937
×
INSDC secondary accession
SRS1997839
lat lon
38.98 N 76.94 W
organism
chicken gut metagenome
collection date
2015-07-13
isolation source
groupA replicate 1
geo loc name
USA
host
Chicken
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2017-02-22
ENA-LAST-UPDATE
2021-02-28
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