JSON

Genome sc|0002245

Name

“Coprococcus intestinihominis”

Database

NCBI Assembly

Accession

GCA_040096555.1

Genomics

Accession
NCBI Assembly:GCA_040096555.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.43%
  • Contamination: 2.52%
  • Quality: 85.83
Ribosomal and transfer RNA genes
  • 4 16S rRNAs (up to 42.0%)
  • 6 23S rRNAs (up to 38.0%)
  • tRNAs for 20 amino acids
Sequencing depth
259.0 ×
Source
Other features
  • G+C Content: 43.29%
  • Coding Density: 88.35%
  • Codon Table: 11
  • N50: 10,738 bp
  • Contigs: 551
  • Largest Contig: 42,882 bp
  • Assembly Length: 3,604,728 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2020-06-04
Location
Lat Lon: 50.776389 N 6.043611 E
Toponym
Geo Loc Name: Germany:Aachen
Environment
Env Broad Scale: urban biome [ENVO:01000249]
Env Local Scale: digestive tract environment [ENVO:01001033]
Env Medium: fecal material [ENVO:00002003]
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved 7 days ago


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