JSON

Genome sc|0002247

Name

“SpSt-150 sp025059775”

Database

NCBI Assembly

Accession

GCA_025059775.1

Genomics

Accession
NCBI Assembly:GCA_025059775.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 99.2%
  • Contamination: 0.2%
  • Quality: 98.2
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 74.0%)
  • 0 23S rRNAs
  • tRNAs for 21 amino acids
Source
Other features
  • G+C Content: 68.0%
  • Coding Density: 93.93%
  • Codon Table: 11
  • N50: 143,159 bp
  • Contigs: 59
  • Largest Contig: 287,093 bp
  • Assembly Length: 2,351,435 bp
  • Ambiguous Assembly Fraction: 0.0044%
Automated checks
Complete
Last modified 6 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2019-11/2020-08
Location
Lat Lon: 3.9956 N 101.3933 E
Toponym
Geo Loc Name: Malaysia: Sungkai, Perak
Environment
Sample Type: metagenomic assembly
Isolation Source: brown biofilm from alkaline hot spring
Env Broad Scale: hot spring [ENVO:00000051]
Env Local Scale: alkaline hot spring [ENVO:00002119]
Env Medium: Biofilm [ENVO:01000156]
Other
Depth: 30 cm/50 cm
Package
Ncbi Submission Package: MIMAG.microbial.6.0
Biosamplemodel: MIMAG.microbial
Additional Accessions
SAMN21353068 and SAMN21353070
All retrieved samples
Metadata retrieved 6 months ago


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