JSON

Genome sc|0002253

Name

“Lachnospira intestinalis”

Database

NCBI Assembly

Accession

GCA_040096395.1

Genomics

Accession
NCBI Assembly:GCA_040096395.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.66%
  • Contamination: 0.67%
  • Quality: 95.31
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 2 23S rRNAs (up to 79.0%)
  • tRNAs for 20 amino acids
Sequencing depth
435.0 ×
Source
Other features
  • G+C Content: 37.05%
  • Coding Density: 90.44%
  • Codon Table: 11
  • N50: 163,768 bp
  • Contigs: 81
  • Largest Contig: 379,644 bp
  • Assembly Length: 3,153,493 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2020-05-08
Location
Lat Lon: 50.776389 N 6.043611 E
Toponym
Geo Loc Name: Germany:Aachen
Environment
Env Broad Scale: urban biome [ENVO:01000249]
Env Local Scale: digestive tract environment [ENVO:01001033]
Env Medium: fecal material [ENVO:00002003]
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved 7 days ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license