JSON

Genome sc|0002264

Name

“Hominicola intestinalis”

Database

NCBI Assembly

Accession

GCA_040096325.1

Genomics

Accession
NCBI Assembly:GCA_040096325.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 95.3%
  • Contamination: 0.67%
  • Quality: 91.95
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 76.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 18 amino acids
Sequencing depth
343.0 ×
Source
Other features
  • G+C Content: 56.25%
  • Coding Density: 85.15%
  • Codon Table: 11
  • N50: 200,073 bp
  • Contigs: 25
  • Largest Contig: 464,360 bp
  • Assembly Length: 2,237,803 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Ribosomal RNA genes were detected using metaxa2.
Automated checks
Complete
Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2020-08-06
Location
Lat Lon: 50.776389 N 6.043611 E
Toponym
Geo Loc Name: Germany:Aachen
Environment
Env Broad Scale: urban biome [ENVO:01000249]
Env Local Scale: digestive tract environment [ENVO:01001033]
Env Medium: fecal material [ENVO:00002003]
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved 6 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license