JSON

Genome sc|0002267

Database

NCBI Assembly

Accession

GCA_016929715.1

Genomics

Accession
NCBI Assembly:GCA_016929715.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.14% (automated estimate: 90.6%)
  • Contamination: 3.3% (automated estimate: 0.9%)
  • Quality: 77.64 (automated estimate: 86.1)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 17 amino acids
Sequencing depth
17.0 ×
Source
Other features
  • G+C Content: 42.78%
  • Coding Density: 95.56%
  • Codon Table: 11
  • N50: 23,798 bp
  • Contigs: 142
  • Largest Contig: 60,712 bp
  • Assembly Length: 1,978,835 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2017-09
Location
Lat Lon: 34.99562 N 98.68895 W
Toponym
Geo Loc Name: USA: Anadarko, OK, Zodletone Spring
Environment
Sample Type: metagenomic assembly
Isolation Source: freshwater sediment
Env Broad Scale: Freshwater sediment biome
Env Local Scale: sediment
Env Medium: sediment
Other
Depth: 1m
Package
Ncbi Submission Package: MIMAG.sediment.5.0
Biosamplemodel: MIMAG.sediment
Additional Accessions
SAMN17269717 Append as BioSamples
All retrieved samples
Metadata retrieved 6 days ago


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