Genome sc|0002270

Genomics

Accession

NCBI Assembly:GCA_001412365.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 95.24% (automated estimate: 96.2%)
• Contamination: 2.2% (automated estimate: 1.9%)
• Quality: 84.24 (automated estimate: 86.7)

Ribosomal and transfer RNA genes

• 2 16S rRNAs (up to 63.0%)
• 2 23S rRNAs (up to 41.0%)
• tRNAs for 20 amino acids

Sequencing depth

214.0 ×

Source

• BioSample: SAMN04125646

Other features

• G+C Content: 37.86%
• Coding Density: 92.21%
• Codon Table: 11
• N50: 12,300 bp
• Contigs: 433
• Largest Contig: 68,577 bp
• Assembly Length: 3,139,690 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 6 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN04125646

Date

Collection Date: 2013-11-10

Location

Lat Lon: 32.70 N 117.16 W

Toponym

Geo Loc Name: USA: San Diego Bay Sediment

Environment

Sample Type: metagenomic assembly

Isolation Source: methanogenic consortium capable of long-chain paraffin degradation (SDB culture) enriched from contaminated sediments of San Diego Bay, California; degrades n-alkanes from C25 to C50

Other

Not detected

Package

Ncbi Submission Package: Microbe.1.0

Biosamplemodel: Microbe, viral or environmental

All retrieved samples

• SAMN04125646: SDB Consortium Genome Bin 3

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Metadata retrieved 6 months ago