JSON

Genome sc|0002272

Database

NCBI Assembly

Accession

GCA_015490465.1

Genomics

Accession
NCBI Assembly:GCA_015490465.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 91.53% (automated estimate: 83.0%)
  • Contamination: 0.0% (automated estimate: 0.0%)
  • Quality: 91.53 (automated estimate: 83.0)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 57.0%)
  • tRNAs for 20 amino acids
Sequencing depth
13.1 ×
Source
Other features
  • G+C Content: 55.09%
  • Coding Density: 93.54%
  • Codon Table: 11
  • N50: 22,179 bp
  • Contigs: 126
  • Largest Contig: 60,702 bp
  • Assembly Length: 2,053,153 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 6 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2018-03
Location
Lat Lon: 34.86111866 S 179.0576651 E
Toponym
Geo Loc Name: Pacific Ocean
Environment
Sample Type: metagenomic assembly
Isolation Source: deep-sea hydrothermal deposit
Env Broad Scale: marine hydrothermal vent biome [ENVO:01000030]
Env Local Scale: marine hydrothermal vent [ENVO:01000122]
Env Medium: deep-sea hydrothermal deposit
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
Additional Accessions
SAMN12239309 Append as BioSamples
All retrieved samples
Metadata retrieved 6 months ago


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