JSON

Genome sc|0002273

Database

NCBI Assembly

Accession

GCA_013153965.1

Genomics

Accession
NCBI Assembly:GCA_013153965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 90.52% (automated estimate: 83.0%)
  • Contamination: 0.0% (automated estimate: 1.9%)
  • Quality: 90.52 (automated estimate: 73.5)
Ribosomal and transfer RNA genes
  • 0 16S rRNAs
  • 0 23S rRNAs
  • tRNAs for 19 amino acids
Sequencing depth
50.0 ×
Source
Other features
  • G+C Content: 58.23%
  • Coding Density: 96.86%
  • Codon Table: 11
  • N50: 36,256 bp
  • Contigs: 63
  • Largest Contig: 113,088 bp
  • Assembly Length: 1,528,338 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 6 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2014-01-01
Location
Lat Lon: 9.7712 N 104.2789 W
Toponym
Geo Loc Name: Pacific Ocean: East Pacific Rise
Environment
Sample Type: metagenomic assembly
Isolation Source: deepsea hydrothermal sulfide chimney
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
Additional Accessions
This BioSample is a metagenomic assembly obtained from the hydrothermal vent metagenome BioSample SAMN13915758 Append as BioSamples
All retrieved samples
Metadata retrieved 6 months ago


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