Genome sc|0002275

Genomics

Accession

NCBI Assembly: GCA_017999445.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 96.61% (automated estimate: 94.3%)
• Contamination: 0.0% (automated estimate: 0.9%)
• Quality: 96.61 (automated estimate: 89.8)

Ribosomal and transfer RNA genes

• 0 16S rRNAs
• 1 23S rRNA (up to 100.0%)
• tRNAs for 20 amino acids

Sequencing depth

90.3 ×

Source

• BioSample: SAMN18118964

Other features

• G+C Content: 40.18%
• Coding Density: 94.38%
• Codon Table: 11
• N50: 223,449 bp
• Contigs: 15
• Largest Contig: 279,408 bp
• Assembly Length: 1,514,041 bp
• Ambiguous Assembly Fraction: 0.0066%

Automated checks

Complete

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Last modified 6 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN18118964

Date

Not detected

Location

Lat Lon: 54.114698 N 13.430010 E

Toponym

Geo Loc Name: Germany: Greifswald

Environment

Sample Type: metagenome assembly

Isolation Source: wastewater

Env Broad Scale: ENVO:00002043

Env Local Scale: ENVO:00002044

Env Medium: ENVO:00003965

Other

Not detected

Package

Ncbi Submission Package: MIMAG.wastewater.6.0

Biosamplemodel: MIMAG.wastewater

Additional Accessions

SAMN14069867, SAMN14069883, SAMN14069900, SAMN14069917, SAMN14069934, SAMN14069951, SAMN14069968 Append as BioSamples

All retrieved samples

• SAMN18118964: MAG bin Gw_SlDig_bin_153 of sample SAMN18038648 generated with metaSPAdes and MetaBAT2

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Metadata retrieved 6 months ago