Genome sc|0002277

Genomics

Accession

NCBI Assembly: GCA_015490555.1

Type

Metagenome-Assembled Genome (MAG)

Estimated Quality Metrics

• Completeness: 91.51% (automated estimate: 91.5%)
• Contamination: 0.1% (automated estimate: 1.9%)
• Quality: 91.01 (automated estimate: 82.0)

Ribosomal and transfer RNA genes

• 1 16S rRNA (up to 69.0%)
• 1 23S rRNA (up to 100.0%)
• tRNAs for 19 amino acids

Sequencing depth

11.4 ×

Source

• BioSample: SAMN12876596

Other features

• G+C Content: 54.73%
• Coding Density: 94.87%
• Codon Table: 11
• N50: 28,522 bp
• Contigs: 109
• Largest Contig: 77,974 bp
• Assembly Length: 2,163,145 bp
• Ambiguous Assembly Fraction: 0.0%

Automated checks

Complete

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Last modified 6 months ago

Sample Metadata

BioSample entries

• BioSample: SAMN12876596

Date

Collection Date: 2018-03

Location

Lat Lon: 34.86111866 S 179.0576651 E

Toponym

Geo Loc Name: Pacific Ocean

Environment

Sample Type: metagenomic assembly

Isolation Source: deep-sea hydrothermal deposit

Env Broad Scale: marine hydrothermal vent biome [ENVO:01000030]

Env Local Scale: marine hydrothermal vent [ENVO:01000122]

Env Medium: deep-sea hydrothermal deposit

Other

Not detected

Package

Ncbi Submission Package: Microbe.1.0

Biosamplemodel: Microbe, viral or environmental

Additional Accessions

SAMN12239309 Append as BioSamples

All retrieved samples

• SAMN12876596: Microbe sample from candidate division WOR-3 bacterium

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Metadata retrieved 6 months ago