JSON

Genome sc|0002281

Database

NCBI Assembly

Accession

GCA_012517375.1

Genomics

Accession
NCBI Assembly:GCA_012517375.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 96.07% (automated estimate: 99.1%)
  • Contamination: 1.12% (automated estimate: 2.8%)
  • Quality: 90.47 (automated estimate: 85.1)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 20 amino acids
Sequencing depth
393.6 ×
Source
Other features
  • G+C Content: 48.75%
  • Coding Density: 90.06%
  • Codon Table: 11
  • N50: 33,841 bp
  • Contigs: 125
  • Largest Contig: 86,033 bp
  • Assembly Length: 2,539,523 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 6 months ago

Sample Metadata

BioSample entries
Date
Not detected
Location
Not detected
Toponym
Not detected
Environment
Sample Type: metagenomic assembly
Isolation Source: anaerobic digestion of organic wastes under variable temperature conditions and feedstocks
Other
Not detected
Package
Ncbi Submission Package: MIMAG.5.0
Biosamplemodel: MIMAG
Additional Accessions
This BioSample is a metagenomic assembly obtained from the anaerobic digester metagenome reads deposited in ERR1876140, ERR1876141 Append as BioSamples
All retrieved samples
Metadata retrieved 6 months ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license