JSON

Genome sc|0002283

Database

NCBI Assembly

Accession

GCA_004376785.1

Genomics

Accession
NCBI Assembly:GCA_004376785.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.68% (automated estimate: 94.3%)
  • Contamination: 2.25% (automated estimate: 1.9%)
  • Quality: 83.43 (automated estimate: 84.8)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 41.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 17 amino acids
Sequencing depth
40.0 ×
Source
Other features
  • G+C Content: 36.57%
  • Coding Density: 92.0%
  • Codon Table: 11
  • N50: 7,472 bp
  • Contigs: 350
  • Largest Contig: 39,040 bp
  • Assembly Length: 1,920,574 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 6 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2011-01-26
Location
Lat Lon: 27.43 N 86.01 W
Toponym
Geo Loc Name: Atlantic Ocean
Environment
Sample Type: metagenomic assembly
Isolation Source: deep sea sediments associated with petroleum seepage
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 6 months ago


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