JSON

Genome sc|0002288

Name

“Stagnicultor aquiferi”

Database

NCBI Assembly

Accession

GCA_013177935.1

Genomics

Accession
NCBI Assembly:GCA_013177935.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.51%
  • Contamination: 0.0%
  • Quality: 95.51
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 100.0%)
  • 1 23S rRNA (up to 100.0%)
  • tRNAs for 21 amino acids
Sequencing depth
80.0 ×
Source
Other features
  • G+C Content: 50.92%
  • Coding Density: 93.42%
  • Codon Table: 11
  • N50: 543,483 bp
  • Contigs: 5
  • Largest Contig: 714,781 bp
  • Assembly Length: 1,956,872 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 6 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2016-04-28
Location
Lat Lon: 58.060226 N 82.826753 E
Toponym
Geo Loc Name: Russia: Chazhemto settlement, Tomsk oblast
Environment
Sample Type: metagenomic assembly
Isolation Source: 2.8-km deep subsurface aquifer
Other
Depth: 2.8 km
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
Additional Accessions
This biosample is a metagenomic assembly obtained from the subsurface metagenome sample SAMN07792362
All retrieved samples
Metadata retrieved 6 months ago


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