JSON

Genome sc|0002292

Database

NCBI Assembly

Accession

GCA_004375965.1

Genomics

Accession
NCBI Assembly:GCA_004375965.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6% (automated estimate: 95.3%)
  • Contamination: 2.52% (automated estimate: 7.5%)
  • Quality: 83.0 (automated estimate: 57.8)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 58.0%)
  • 2 23S rRNAs (up to 31.0%)
  • tRNAs for 17 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 37.67%
  • Coding Density: 88.61%
  • Codon Table: 11
  • N50: 15,960 bp
  • Contigs: 263
  • Largest Contig: 86,237 bp
  • Assembly Length: 2,289,108 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete
Last modified 6 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2011-01-26
Location
Lat Lon: 27.43 N 86.01 W
Toponym
Geo Loc Name: Atlantic Ocean
Environment
Sample Type: metagenomic assembly
Isolation Source: deep sea sediments associated with petroleum seepage
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 6 months ago


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