JSON

Genome sc|0002293

Database

NCBI Assembly

Accession

GCA_004375785.1

Genomics

Accession
NCBI Assembly:GCA_004375785.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 94.51% (automated estimate: 96.2%)
  • Contamination: 0.0% (automated estimate: 2.8%)
  • Quality: 94.51 (automated estimate: 82.2)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 35.0%)
  • 1 23S rRNA (up to 58.0%)
  • tRNAs for 18 amino acids
Sequencing depth
10.0 ×
Source
Other features
  • G+C Content: 38.06%
  • Coding Density: 89.25%
  • Codon Table: 11
  • N50: 10,104 bp
  • Contigs: 362
  • Largest Contig: 39,896 bp
  • Assembly Length: 2,553,431 bp
  • Ambiguous Assembly Fraction: 0.0%
Automated checks
Complete

Sample Metadata

Date
Collection Date: 2011-02-11
Location
Lat Lon: 26.28 N 86.81 W
Toponym
Geo Loc Name: Atlantic Ocean
Environment
Sample Type: metagenomic assembly
Isolation Source: deep sea sediments associated with petroleum seepage
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 8 days ago


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