JSON

Genome sc|0002297

Database

NCBI Assembly

Accession

GCA_003526185.1

Genomics

Accession
NCBI Assembly:GCA_003526185.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
  • Completeness: 95.6% (automated estimate: 93.4%)
  • Contamination: 0.0% (automated estimate: 2.8%)
  • Quality: 95.6 (automated estimate: 79.4)
Ribosomal and transfer RNA genes
  • 1 16S rRNA (up to 29.0%)
  • 0 23S rRNAs
  • tRNAs for 20 amino acids
Sequencing depth
20.5 ×
Source
Other features
  • G+C Content: 31.57%
  • Coding Density: 96.25%
  • Codon Table: 11
  • N50: 143,970 bp
  • Contigs: 36
  • Largest Contig: 325,136 bp
  • Assembly Length: 1,794,741 bp
  • Ambiguous Assembly Fraction: 0.095%
Automated checks
Complete

Sample Metadata

Date
Collection Date: not applicable
Location
Not detected
Toponym
Geo Loc Name: not applicable
Environment
Sample Type: metagenomic assembly
Isolation Source: terrestrial
Other
Not detected
Package
Ncbi Submission Package: Microbe.1.0
Biosamplemodel: Microbe, viral or environmental
All retrieved samples
Metadata retrieved 6 days ago


© 2022-2024 The SeqCode Initiative
  All information contributed to the SeqCode Registry is released under the terms of the Creative Commons Attribution (CC BY) 4.0 license