JSON

Genome sc|0002308

Name

“Lachnospira intestinalis”

Database

NCBI Assembly

Accession

GCA_040095895.1

Genomics

Accession
NCBI Assembly:GCA_040095895.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 99.33%
  • Contamination: 0.0%
  • Quality: 99.33
Ribosomal and transfer RNA genes
  • 2 16S rRNAs (up to 62.0%)
  • 2 23S rRNAs (up to 46.0%)
  • tRNAs for 18 amino acids
Sequencing depth
617.0 ×
Source
Other features
  • G+C Content: 41.75%
  • Coding Density: 89.03%
  • Codon Table: 11
  • N50: 227,399 bp
  • Contigs: 35
  • Largest Contig: 485,898 bp
  • Assembly Length: 3,097,876 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Ribosomal RNA genes were detected using metaxa2.
Automated checks
Complete
Last modified about 2 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2020-02-18
Location
Lat Lon: 50.776389 N 6.043611 E
Toponym
Geo Loc Name: Germany:Aachen
Environment
Env Broad Scale: urban biome [ENVO:01000249]
Env Local Scale: digestive tract environment [ENVO:01001033]
Env Medium: fecal material [ENVO:00002003]
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved 6 months ago


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