JSON

Genome sc|0002309

Name

“Lachnospira rogosae”

Database

NCBI Assembly

Accession

GCA_040096455.1

Genomics

Accession
NCBI Assembly:GCA_040096455.1
Type
Isolate Genome
Estimated Quality Metrics
  • Completeness: 98.66%
  • Contamination: 0.0%
  • Quality: 98.66
Ribosomal and transfer RNA genes
  • 4 16S rRNAs (up to 56.0%)
  • 3 23S rRNAs (up to 40.0%)
  • tRNAs for 20 amino acids
Sequencing depth
307.0 ×
Source
Other features
  • G+C Content: 36.1%
  • Coding Density: 87.63%
  • Codon Table: 11
  • N50: 356,991 bp
  • Contigs: 23
  • Largest Contig: 531,548 bp
  • Assembly Length: 2,798,283 bp
  • Ambiguous Assembly Fraction: 0.0%
Submitter comments
Ribosomal RNA genes were detected using metaxa2.
Automated checks
Complete
Last modified 3 months ago

Sample Metadata

BioSample entries
Date
Collection Date: 2020-11-23
Location
Lat Lon: 50.776389 N 6.043611 E
Toponym
Geo Loc Name: Germany:Aachen
Environment
Env Broad Scale: urban biome [ENVO:01000249]
Env Local Scale: digestive tract environment [ENVO:01001033]
Env Medium: fecal material [ENVO:00002003]
Other
Host: Homo sapiens
Rel To Oxygen: anaerobe
Package
Ncbi Submission Package: MIGS.ba.human-gut.6.0
Biosamplemodel: MIGS/MIMS/MIMARKS.human-gut
All retrieved samples
Metadata retrieved 3 months ago


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