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cognitis nomina
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Genomes
sc|0000232
JSON
Genome sc|0000232
Name
“Fournierella merdipullorum”
Database
NCBI Assembly
Accession
GCA_019116345.1
Genomics
Accession
NCBI Assembly:
GCA_019116345.1
Type
Metagenome-Assembled Genome (MAG)
Estimated Quality Metrics
Completeness:
91.33%
Contamination:
0.74%
Quality:
87.63
Ribosomal and transfer RNA genes
0 16S rRNAs
0 23S rRNAs
tRNAs for 20 amino acids
Source
BioSample: SAMN15816693
BioSample: SAMN08009847
Other features
G+C Content:
62.57%
Coding Density:
90.3%
Codon Table:
11
N50:
29,385 bp
Contigs:
119
Largest Contig:
113,609 bp
Assembly Length:
2,466,888 bp
Ambiguous Assembly Fraction:
0.0%
Automated checks
Complete
Last modified
11 months ago
Sample Metadata
BioSample entries
BioSample: SAMN15816693
BioSample: SAMN08009847
Date
Collection Date:
2015-07-02
Location
Not detected
Toponym
Geo Loc Name:
China:Guandong
Environment
Sample Type:
metagenomic assembly
Isolation Source:
jejunum
Other
Host:
Gallus gallus
Package
Ncbi Submission Package:
Microbe.1.0
Biosamplemodel:
Microbe, viral or environmental • Metagenome or environmental
Additional Accessions
SRR6323494
All retrieved samples
SAMN15816693
: Microbe sample from Candidatus Fournierella merdipullorum
SAMN08009847
: Metagenome or environmental sample from chicken gut metagenome
Metadata retrieved
11 months ago
© 2022-2024 The SeqCode Initiative
All information contributed to the SeqCode Registry is released under the terms of the
Creative Commons Attribution (CC BY) 4.0
license
Automated Estimates
×
This genome was automatically retrieved and processed using MiGA (The Microbial Genomes Atlas)
[1]
, and the estimate has not been overridden by the submitter.
Rodriguez-R et al, 2018, NAR.
DOI: 10.1093/nar/gky467
SAMN15816693
×
organism
Candidatus Fournierella merdipullorum
metagenomic
1
derived-from
This BioSample is a metagenomic assembly obtained from the publicly available reads deposited in SRA accessions: SRR6323494
environmental sample
1
Source Metagenome Bioproject
PRJNA417359
metagenome source
gut metagenome
isolate
ChiGjej4B4-18154
NCBI submission package
Microbe.1.0
GTDB_organism_name
Fournierella merdipullorum
host
Gallus gallus
previous_organism_name
Fournierella sp.
NCBI_LCA_organism_name
Fournierella sp.
sample-type
metagenomic assembly
BioSampleModel
Microbe, viral or environmental
ENA-FIRST-PUBLIC
2020-09-21
ENA-LAST-UPDATE
2021-06-09
SAMN08009847
×
sample replicate
digesta from one chicken (biological replicate 1)
INSDC secondary accession
SRS2714871
organism
chicken gut metagenome
collection date
2015-07-02
isolation source
jejunum
geo loc name
China:Guandong
host
Gallus gallus
host age
62-day
host gender
male
BioSampleModel
Metagenome or environmental
ENA-FIRST-PUBLIC
2017-12-03
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